Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Mir6956-201ENSMUST00000183598 62 ntBASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Gm37171-201ENSMUST00000192636 1185 ntBASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Gm43474-201ENSMUST00000196415 774 ntBASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC18.44■□□□□ 0.54
Nup98Q6PFD9 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Nup98Q6PFD9 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.43■□□□□ 0.54
Nup98Q6PFD9 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Gm8396-201ENSMUST00000057361 823 ntBASIC18.43■□□□□ 0.54
Nup98Q6PFD9 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nup98Q6PFD9 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 AC126250.1-201ENSMUST00000228343 1768 ntBASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gm13616-201ENSMUST00000120600 222 ntBASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gm13365-201ENSMUST00000121188 973 ntBASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nup98Q6PFD9 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.41■□□□□ 0.54
Nup98Q6PFD9 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 AC159114.1-201ENSMUST00000220349 266 ntBASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Nup98Q6PFD9 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms