Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Gm2651-201ENSMUST00000203560 838 ntBASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Gm18206-201ENSMUST00000207027 926 ntBASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rtl3Q6P1Y1 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Gm6257-201ENSMUST00000163864 910 ntBASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Gm6296-201ENSMUST00000222599 943 ntBASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rtl3Q6P1Y1 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm7862-201ENSMUST00000121461 292 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm8825-201ENSMUST00000182565 998 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm4518-201ENSMUST00000182638 718 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rtl3Q6P1Y1 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rtl3Q6P1Y1 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.27■□□□□ 0.19
Rtl3Q6P1Y1 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Rtl3Q6P1Y1 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.19
Rtl3Q6P1Y1 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rtl3Q6P1Y1 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Rtl3Q6P1Y1 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rtl3Q6P1Y1 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms