Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim28Q62318 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trim28Q62318 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Gm5177-201ENSMUST00000183092 997 ntBASIC20.42■□□□□ 0.86
Trim28Q62318 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trim28Q62318 Gm18246-201ENSMUST00000221023 728 ntBASIC20.42■□□□□ 0.86
Trim28Q62318 Ndufaf2-202ENSMUST00000223734 556 ntBASIC20.42■□□□□ 0.86
Trim28Q62318 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Trim28Q62318 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.42■□□□□ 0.86
Trim28Q62318 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim28Q62318 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Trim28Q62318 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Gm11453-201ENSMUST00000117318 1007 ntBASIC20.41■□□□□ 0.86
Trim28Q62318 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC20.41■□□□□ 0.86
Trim28Q62318 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Gm27397-201ENSMUST00000184997 107 ntBASIC20.41■□□□□ 0.86
Trim28Q62318 Gm44492-201ENSMUST00000197012 141 ntBASIC20.41■□□□□ 0.86
Trim28Q62318 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Trim28Q62318 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim28Q62318 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Gm4913-201ENSMUST00000117075 1290 ntBASIC20.4■□□□□ 0.86
Trim28Q62318 Gm14822-201ENSMUST00000122247 291 ntBASIC20.4■□□□□ 0.86
Trim28Q62318 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Gm6736-201ENSMUST00000166583 948 ntBASIC20.4■□□□□ 0.86
Trim28Q62318 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Trim28Q62318 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim28Q62318 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim28Q62318 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim28Q62318 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim28Q62318 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC20.39■□□□□ 0.85
Trim28Q62318 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC20.39■□□□□ 0.85
Trim28Q62318 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Trim28Q62318 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Trim28Q62318 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Trim28Q62318 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC20.39■□□□□ 0.85
Trim28Q62318 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Trim28Q62318 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim28Q62318 Gm7901-201ENSMUST00000120430 1597 ntBASIC20.38■□□□□ 0.85
Trim28Q62318 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim28Q62318 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim28Q62318 Gm12892-201ENSMUST00000117367 1146 ntBASIC20.38■□□□□ 0.85
Trim28Q62318 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim28Q62318 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim28Q62318 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC20.37■□□□□ 0.85
Trim28Q62318 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC20.37■□□□□ 0.85
Trim28Q62318 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Trim28Q62318 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim28Q62318 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms