Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col27a1Q5QNQ9 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm27838-201ENSMUST00000184829 128 ntBASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm18062-201ENSMUST00000208020 547 ntBASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm18055-201ENSMUST00000208254 547 ntBASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col27a1Q5QNQ9 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Haglr-201ENSMUST00000100000 2085 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm14042-201ENSMUST00000120139 833 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm23984-201ENSMUST00000157139 203 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm16026-204ENSMUST00000162652 683 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm43703-201ENSMUST00000200523 763 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 AC153962.4-201ENSMUST00000217878 242 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Prkcz2-201ENSMUST00000206136 1756 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm24543-201ENSMUST00000103867 82 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm6539-201ENSMUST00000119157 1064 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Gm6180-201ENSMUST00000065243 498 ntBASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col27a1Q5QNQ9 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col27a1Q5QNQ9 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col27a1Q5QNQ9 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col27a1Q5QNQ9 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Col27a1Q5QNQ9 Gm28631-201ENSMUST00000190740 334 ntBASIC15.05■□□□□ -0
Col27a1Q5QNQ9 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms