Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Usp28Q5I043 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp28Q5I043 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp28Q5I043 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Usp28Q5I043 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Gm29518-201ENSMUST00000190858 372 ntBASIC17.92■□□□□ 0.46
Usp28Q5I043 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.92■□□□□ 0.46
Usp28Q5I043 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Usp28Q5I043 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp28Q5I043 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
Usp28Q5I043 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp28Q5I043 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Usp28Q5I043 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp28Q5I043 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.9■□□□□ 0.46
Usp28Q5I043 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
Usp28Q5I043 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.9■□□□□ 0.46
Usp28Q5I043 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.9■□□□□ 0.46
Usp28Q5I043 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Usp28Q5I043 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.9■□□□□ 0.46
Usp28Q5I043 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Usp28Q5I043 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp28Q5I043 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Usp28Q5I043 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms