Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Limch1Q3UH68 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 CT010478.1-201ENSMUST00000220747 2787 ntBASIC18.55■□□□□ 0.56
Limch1Q3UH68 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Mir6404-201ENSMUST00000183699 94 ntBASIC18.55■□□□□ 0.56
Limch1Q3UH68 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Limch1Q3UH68 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 App-207ENSMUST00000227737 2827 ntBASIC18.54■□□□□ 0.56
Limch1Q3UH68 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC18.54■□□□□ 0.56
Limch1Q3UH68 Gm12644-201ENSMUST00000119935 606 ntBASIC18.54■□□□□ 0.56
Limch1Q3UH68 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.54■□□□□ 0.56
Limch1Q3UH68 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC18.54■□□□□ 0.56
Limch1Q3UH68 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Limch1Q3UH68 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Gm13312-201ENSMUST00000119631 718 ntBASIC18.53■□□□□ 0.56
Limch1Q3UH68 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC18.53■□□□□ 0.56
Limch1Q3UH68 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Gm5867-201ENSMUST00000063197 592 ntBASIC18.53■□□□□ 0.56
Limch1Q3UH68 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Limch1Q3UH68 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Rprl3-201ENSMUST00000157400 290 ntBASIC18.52■□□□□ 0.56
Limch1Q3UH68 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Limch1Q3UH68 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Limch1Q3UH68 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
Limch1Q3UH68 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Limch1Q3UH68 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Limch1Q3UH68 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Limch1Q3UH68 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC18.52■□□□□ 0.55
Limch1Q3UH68 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms