Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Shmt1P50431 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Shmt1P50431 Gm7230-201ENSMUST00000173026 815 ntBASIC16.67■□□□□ 0.26
Shmt1P50431 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.67■□□□□ 0.26
Shmt1P50431 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC16.67■□□□□ 0.26
Shmt1P50431 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Shmt1P50431 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Shmt1P50431 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Shmt1P50431 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shmt1P50431 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Shmt1P50431 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Shmt1P50431 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Shmt1P50431 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.66■□□□□ 0.26
Shmt1P50431 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.66■□□□□ 0.26
Shmt1P50431 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.66■□□□□ 0.26
Shmt1P50431 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shmt1P50431 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Shmt1P50431 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.65■□□□□ 0.26
Shmt1P50431 Gm18206-201ENSMUST00000207027 926 ntBASIC16.65■□□□□ 0.26
Shmt1P50431 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.65■□□□□ 0.26
Shmt1P50431 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.65■□□□□ 0.26
Shmt1P50431 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.65■□□□□ 0.26
Shmt1P50431 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Shmt1P50431 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Shmt1P50431 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.65■□□□□ 0.26
Shmt1P50431 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Shmt1P50431 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Shmt1P50431 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC16.64■□□□□ 0.25
Shmt1P50431 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.64■□□□□ 0.25
Shmt1P50431 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.64■□□□□ 0.25
Shmt1P50431 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.64■□□□□ 0.25
Shmt1P50431 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Shmt1P50431 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.63■□□□□ 0.25
Shmt1P50431 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shmt1P50431 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms