Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 AC115863.1-201ENSMUST00000214815 1813 ntBASIC12.78□□□□□ -0.36
Cdx1P18111 Gm43697-201ENSMUST00000199637 2581 ntBASIC12.78□□□□□ -0.36
Cdx1P18111 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Cdx1P18111 Gm38042-201ENSMUST00000191614 5208 ntBASIC12.78□□□□□ -0.36
Cdx1P18111 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Cdx1P18111 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Cdx1P18111 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Cdx1P18111 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Cdx1P18111 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Cdx1P18111 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC12.78□□□□□ -0.36
Cdx1P18111 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC12.78□□□□□ -0.36
Cdx1P18111 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC12.78□□□□□ -0.36
Cdx1P18111 Mir2861-201ENSMUST00000175539 82 ntBASIC12.78□□□□□ -0.36
Cdx1P18111 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC12.78□□□□□ -0.36
Cdx1P18111 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC12.78□□□□□ -0.36
Cdx1P18111 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Gm18959-201ENSMUST00000208954 655 ntBASIC12.78□□□□□ -0.36
Cdx1P18111 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Cdx1P18111 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdx1P18111 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC12.77□□□□□ -0.36
Cdx1P18111 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Cdx1P18111 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cdx1P18111 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Cdx1P18111 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC12.77□□□□□ -0.37
Cdx1P18111 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC12.77□□□□□ -0.37
Cdx1P18111 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Gm27528-202ENSMUST00000222916 2012 ntBASIC12.77□□□□□ -0.37
Cdx1P18111 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC12.77□□□□□ -0.37
Cdx1P18111 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Cdx1P18111 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdx1P18111 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Cdx1P18111 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Phf7-203ENSMUST00000226565 1971 ntBASIC12.76□□□□□ -0.37
Cdx1P18111 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC12.76□□□□□ -0.37
Cdx1P18111 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms