Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Gm15693-201ENSMUST00000120470 637 ntBASIC18.35■□□□□ 0.53
Col1a1P11087 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC18.35■□□□□ 0.53
Col1a1P11087 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Haglr-201ENSMUST00000100000 2085 ntBASIC18.35■□□□□ 0.53
Col1a1P11087 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Col1a1P11087 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col1a1P11087 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.35■□□□□ 0.53
Col1a1P11087 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col1a1P11087 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Col1a1P11087 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC18.34■□□□□ 0.53
Col1a1P11087 Gm5745-201ENSMUST00000183748 313 ntBASIC18.34■□□□□ 0.53
Col1a1P11087 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.34■□□□□ 0.53
Col1a1P11087 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Col1a1P11087 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col1a1P11087 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC18.34■□□□□ 0.53
Col1a1P11087 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
Col1a1P11087 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col1a1P11087 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC18.33■□□□□ 0.53
Col1a1P11087 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.33■□□□□ 0.53
Col1a1P11087 Gm10154-201ENSMUST00000084445 354 ntBASIC18.33■□□□□ 0.53
Col1a1P11087 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col1a1P11087 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col1a1P11087 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col1a1P11087 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col1a1P11087 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col1a1P11087 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col1a1P11087 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col1a1P11087 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col1a1P11087 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col1a1P11087 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col1a1P11087 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC18.33■□□□□ 0.52
Col1a1P11087 AC125206.2-201ENSMUST00000217454 574 ntBASIC18.33■□□□□ 0.52
Col1a1P11087 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col1a1P11087 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 AC025913.2-201ENSMUST00000220136 1766 ntBASIC18.32■□□□□ 0.52
Col1a1P11087 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC18.32■□□□□ 0.52
Col1a1P11087 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.32■□□□□ 0.52
Col1a1P11087 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col1a1P11087 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.31■□□□□ 0.52
Col1a1P11087 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col1a1P11087 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.31■□□□□ 0.52
Col1a1P11087 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC18.31■□□□□ 0.52
Col1a1P11087 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Gm5866-201ENSMUST00000177881 973 ntBASIC18.31■□□□□ 0.52
Col1a1P11087 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 AC166341.4-201ENSMUST00000220625 123 ntBASIC18.31■□□□□ 0.52
Col1a1P11087 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Col1a1P11087 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col1a1P11087 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms