Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Col3a1P08121 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Gm12008-201ENSMUST00000117791 755 ntBASIC18.71■□□□□ 0.59
Col3a1P08121 Gm15920-201ENSMUST00000118998 402 ntBASIC18.71■□□□□ 0.59
Col3a1P08121 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC18.71■□□□□ 0.59
Col3a1P08121 Gm27494-201ENSMUST00000184735 189 ntBASIC18.71■□□□□ 0.59
Col3a1P08121 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.71■□□□□ 0.59
Col3a1P08121 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.71■□□□□ 0.59
Col3a1P08121 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col3a1P08121 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Gm29361-201ENSMUST00000183323 2000 ntBASIC18.71■□□□□ 0.59
Col3a1P08121 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC18.71■□□□□ 0.59
Col3a1P08121 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col3a1P08121 Gm27301-201ENSMUST00000184012 127 ntBASIC18.71■□□□□ 0.59
Col3a1P08121 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col3a1P08121 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col3a1P08121 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Col3a1P08121 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Col3a1P08121 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Col3a1P08121 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Col3a1P08121 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Gm42473-201ENSMUST00000201056 2291 ntBASIC18.7■□□□□ 0.58
Col3a1P08121 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.7■□□□□ 0.58
Col3a1P08121 Grk6-207ENSMUST00000225925 2769 ntBASIC18.7■□□□□ 0.58
Col3a1P08121 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
Col3a1P08121 Gm17271-201ENSMUST00000165535 355 ntBASIC18.7■□□□□ 0.58
Col3a1P08121 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Col3a1P08121 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col3a1P08121 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC18.7■□□□□ 0.58
Col3a1P08121 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC18.7■□□□□ 0.58
Col3a1P08121 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col3a1P08121 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Col3a1P08121 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
Col3a1P08121 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Col3a1P08121 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC18.69■□□□□ 0.58
Col3a1P08121 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col3a1P08121 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC18.69■□□□□ 0.58
Col3a1P08121 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Gm8396-201ENSMUST00000057361 823 ntBASIC18.69■□□□□ 0.58
Col3a1P08121 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col3a1P08121 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC18.68■□□□□ 0.58
Col3a1P08121 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.68■□□□□ 0.58
Col3a1P08121 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col3a1P08121 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col3a1P08121 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col3a1P08121 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col3a1P08121 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Col3a1P08121 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col3a1P08121 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC18.67■□□□□ 0.58
Col3a1P08121 Mir1895-201ENSMUST00000122615 79 ntBASIC18.67■□□□□ 0.58
Col3a1P08121 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC18.67■□□□□ 0.58
Col3a1P08121 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col3a1P08121 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col3a1P08121 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms