Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb3O54879 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Hmgb3O54879 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC13.11□□□□□ -0.31
Hmgb3O54879 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Hmgb3O54879 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Gfra2-202ENSMUST00000227633 1480 ntBASIC13.1□□□□□ -0.31
Hmgb3O54879 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Hmgb3O54879 Gm10676-201ENSMUST00000098778 3221 ntBASIC13.1□□□□□ -0.31
Hmgb3O54879 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC13.1□□□□□ -0.31
Hmgb3O54879 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC13.1□□□□□ -0.31
Hmgb3O54879 Gm27275-201ENSMUST00000184318 272 ntBASIC13.1□□□□□ -0.31
Hmgb3O54879 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC13.1□□□□□ -0.31
Hmgb3O54879 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Hmgb3O54879 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
Hmgb3O54879 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb3O54879 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb3O54879 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hmgb3O54879 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb3O54879 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC13.09□□□□□ -0.31
Hmgb3O54879 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms