Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.16■□□□□ 0.34
Nr1h3Q9Z0Y9 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Gm45683-201ENSMUST00000210825 1247 ntBASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Gm15823-201ENSMUST00000064305 670 ntBASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Nr1h3Q9Z0Y9 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.34
Nr1h3Q9Z0Y9 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
Nr1h3Q9Z0Y9 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Gm14494-201ENSMUST00000118786 435 ntBASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Gm18622-201ENSMUST00000219361 595 ntBASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nr1h3Q9Z0Y9 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Gm42790-201ENSMUST00000201268 969 ntBASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.13■□□□□ 0.33
Nr1h3Q9Z0Y9 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Nr1h3Q9Z0Y9 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h3Q9Z0Y9 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h3Q9Z0Y9 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h3Q9Z0Y9 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h3Q9Z0Y9 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nr1h3Q9Z0Y9 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms