Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim3Q9R1R2 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Mir3081-201ENSMUST00000175305 84 ntBASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Trim3Q9R1R2 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Gm18669-201ENSMUST00000216049 778 ntBASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC14.89□□□□□ -0.03
Trim3Q9R1R2 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Trim3Q9R1R2 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Gm28033-201ENSMUST00000184224 96 ntBASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim3Q9R1R2 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms