Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Gm42473-201ENSMUST00000201056 2291 ntBASIC18.61■□□□□ 0.57
Scn11aQ9R053 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn11aQ9R053 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.6■□□□□ 0.57
Scn11aQ9R053 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.6■□□□□ 0.57
Scn11aQ9R053 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn11aQ9R053 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Gm29361-201ENSMUST00000183323 2000 ntBASIC18.59■□□□□ 0.57
Scn11aQ9R053 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Scn11aQ9R053 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
Scn11aQ9R053 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Scn11aQ9R053 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC18.58■□□□□ 0.57
Scn11aQ9R053 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Scn11aQ9R053 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC18.58■□□□□ 0.57
Scn11aQ9R053 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Scn11aQ9R053 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
Scn11aQ9R053 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Gm45293-201ENSMUST00000209754 1812 ntBASIC18.57■□□□□ 0.56
Scn11aQ9R053 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
Scn11aQ9R053 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.56■□□□□ 0.56
Scn11aQ9R053 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Rpph1-201ENSMUST00000175096 319 ntBASIC18.56■□□□□ 0.56
Scn11aQ9R053 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm44335-201ENSMUST00000196879 141 ntBASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm44297-201ENSMUST00000198304 141 ntBASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm44346-201ENSMUST00000198851 141 ntBASIC18.56■□□□□ 0.56
Scn11aQ9R053 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Scn11aQ9R053 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms