Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim54Q9ERP3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trim54Q9ERP3 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim54Q9ERP3 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Gm43575-201ENSMUST00000196420 516 ntBASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim54Q9ERP3 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Gm6736-201ENSMUST00000166583 948 ntBASIC17.06■□□□□ 0.32
Trim54Q9ERP3 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim54Q9ERP3 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms