Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 H2af-ps-201ENSMUST00000119066 295 ntBASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Gm6736-201ENSMUST00000166583 948 ntBASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cpsf1Q9EPU4 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cpsf1Q9EPU4 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Gm27397-201ENSMUST00000184997 107 ntBASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cpsf1Q9EPU4 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cpsf1Q9EPU4 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Gm14822-201ENSMUST00000122247 291 ntBASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Grk6-207ENSMUST00000225925 2769 ntBASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cpsf1Q9EPU4 Ndufaf2-202ENSMUST00000223734 556 ntBASIC21.64■■□□□ 1.06
Cpsf1Q9EPU4 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Cpsf1Q9EPU4 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Cpsf1Q9EPU4 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC21.64■■□□□ 1.06
Cpsf1Q9EPU4 AC163637.1-201ENSMUST00000215491 1894 ntBASIC21.64■■□□□ 1.05
Cpsf1Q9EPU4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cpsf1Q9EPU4 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cpsf1Q9EPU4 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cpsf1Q9EPU4 Gm42918-201ENSMUST00000199249 1580 ntBASIC21.64■■□□□ 1.05
Cpsf1Q9EPU4 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Gm17968-201ENSMUST00000194902 784 ntBASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 AC174742.1-201ENSMUST00000218272 304 ntBASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Gm18246-201ENSMUST00000221023 728 ntBASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC21.63■■□□□ 1.05
Cpsf1Q9EPU4 Gm15500-202ENSMUST00000071641 1019 ntBASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms