Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RTRAFQ9CQE8 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Gm37736-201ENSMUST00000193564 2802 ntBASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Alkbh1-212ENSMUST00000185301 408 ntBASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RTRAFQ9CQE8 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Mir5133-201ENSMUST00000174955 77 ntBASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Gm9694-201ENSMUST00000193347 1189 ntBASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Gm44672-201ENSMUST00000206944 1098 ntBASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RTRAFQ9CQE8 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
RTRAFQ9CQE8 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
RTRAFQ9CQE8 Gm43352-201ENSMUST00000196419 3065 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms