Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim60Q8VI40 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.38■□□□□ 0.21
Trim60Q8VI40 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim60Q8VI40 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.37■□□□□ 0.21
Trim60Q8VI40 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim60Q8VI40 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim60Q8VI40 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Trim60Q8VI40 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim60Q8VI40 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Mir6404-201ENSMUST00000183699 94 ntBASIC16.36■□□□□ 0.21
Trim60Q8VI40 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim60Q8VI40 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim60Q8VI40 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Trim60Q8VI40 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.35■□□□□ 0.21
Trim60Q8VI40 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.35■□□□□ 0.21
Trim60Q8VI40 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms