Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm8825-201ENSMUST00000182565 998 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm4518-201ENSMUST00000182638 718 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm8330-201ENSMUST00000182754 1008 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm4575-201ENSMUST00000182991 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm8709-201ENSMUST00000183230 1012 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm10293-201ENSMUST00000076317 1002 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm6316-201ENSMUST00000082064 1020 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Brf1Q8CFK2 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.09■□□□□ 0.65
Brf1Q8CFK2 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.08■□□□□ 0.65
Brf1Q8CFK2 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Brf1Q8CFK2 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Brf1Q8CFK2 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Brf1Q8CFK2 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Brf1Q8CFK2 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Brf1Q8CFK2 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Gm4459-201ENSMUST00000118750 468 ntBASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Gm34391-201ENSMUST00000203706 907 ntBASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 AC160338.1-201ENSMUST00000214232 705 ntBASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
Brf1Q8CFK2 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Brf1Q8CFK2 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Gm17971-201ENSMUST00000190239 806 ntBASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 AC133083.1-201ENSMUST00000221736 2209 ntBASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Brf1Q8CFK2 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Gm12497-201ENSMUST00000138778 237 ntBASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
Brf1Q8CFK2 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC19.05■□□□□ 0.64
Brf1Q8CFK2 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms