Protein–RNA interactions for Protein: Q61602

Gli3, Transcriptional activator GLI3, mousemouse

Predictions only

Length 1,583 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gli3Q61602 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Gli3Q61602 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC21.21■□□□□ 0.99
Gli3Q61602 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Gli3Q61602 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Gli3Q61602 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC21.21■□□□□ 0.99
Gli3Q61602 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Gli3Q61602 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Gli3Q61602 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Gli3Q61602 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Gm11425-201ENSMUST00000119608 498 ntBASIC21.2■□□□□ 0.98
Gli3Q61602 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Gm9257-201ENSMUST00000221254 232 ntBASIC21.2■□□□□ 0.98
Gli3Q61602 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Gm9396-201ENSMUST00000076703 567 ntBASIC21.2■□□□□ 0.98
Gli3Q61602 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Gli3Q61602 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Gli3Q61602 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC21.19■□□□□ 0.98
Gli3Q61602 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC21.19■□□□□ 0.98
Gli3Q61602 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Gli3Q61602 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Gli3Q61602 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Gli3Q61602 Gm45195-201ENSMUST00000205597 1008 ntBASIC21.19■□□□□ 0.98
Gli3Q61602 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Gli3Q61602 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Gli3Q61602 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 AC131068.2-201ENSMUST00000226175 1453 ntBASIC21.18■□□□□ 0.98
Gli3Q61602 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC21.18■□□□□ 0.98
Gli3Q61602 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC21.18■□□□□ 0.98
Gli3Q61602 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Gm4875-201ENSMUST00000118257 786 ntBASIC21.18■□□□□ 0.98
Gli3Q61602 Gm43703-201ENSMUST00000200523 763 ntBASIC21.18■□□□□ 0.98
Gli3Q61602 AC238811.1-201ENSMUST00000225302 441 ntBASIC21.18■□□□□ 0.98
Gli3Q61602 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Gli3Q61602 Gm15823-201ENSMUST00000064305 670 ntBASIC21.18■□□□□ 0.98
Gli3Q61602 Grk6-207ENSMUST00000225925 2769 ntBASIC21.17■□□□□ 0.98
Gli3Q61602 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Gli3Q61602 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Gli3Q61602 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Gli3Q61602 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC21.17■□□□□ 0.98
Gli3Q61602 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Gli3Q61602 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Gli3Q61602 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Gli3Q61602 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC21.17■□□□□ 0.98
Gli3Q61602 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Gli3Q61602 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Gli3Q61602 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC21.16■□□□□ 0.98
Gli3Q61602 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Gli3Q61602 Gm7286-201ENSMUST00000182691 1007 ntBASIC21.16■□□□□ 0.98
Gli3Q61602 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC21.16■□□□□ 0.98
Gli3Q61602 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC21.16■□□□□ 0.98
Gli3Q61602 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC21.16■□□□□ 0.98
Gli3Q61602 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Gli3Q61602 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Gli3Q61602 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Gli3Q61602 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Gli3Q61602 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Gli3Q61602 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Gm4204-201ENSMUST00000110798 1231 ntBASIC21.15■□□□□ 0.98
Gli3Q61602 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC21.15■□□□□ 0.98
Gli3Q61602 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Fam105a-203ENSMUST00000226170 3043 ntBASIC21.15■□□□□ 0.98
Gli3Q61602 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Gli3Q61602 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Gli3Q61602 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms