Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Upf3bQ3ULL6 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Gm6257-201ENSMUST00000163864 910 ntBASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Upf3bQ3ULL6 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Gm7506-201ENSMUST00000207758 815 ntBASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Upf3bQ3ULL6 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Upf3bQ3ULL6 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.89■□□□□ 0.3
Upf3bQ3ULL6 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Upf3bQ3ULL6 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Upf3bQ3ULL6 Gm17971-201ENSMUST00000190239 806 ntBASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms