Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sox1P53783 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sox1P53783 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.14■□□□□ 0.17
Sox1P53783 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Sox1P53783 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Sox1P53783 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sox1P53783 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sox1P53783 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sox1P53783 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Sox1P53783 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Sox1P53783 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.13■□□□□ 0.17
Sox1P53783 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.13■□□□□ 0.17
Sox1P53783 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Mir6404-201ENSMUST00000183699 94 ntBASIC16.13■□□□□ 0.17
Sox1P53783 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.13■□□□□ 0.17
Sox1P53783 Gm6888-201ENSMUST00000221983 706 ntBASIC16.13■□□□□ 0.17
Sox1P53783 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Sox1P53783 Gm5357-201ENSMUST00000212720 1924 ntBASIC16.13■□□□□ 0.17
Sox1P53783 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Sox1P53783 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.13■□□□□ 0.17
Sox1P53783 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sox1P53783 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Sox1P53783 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Sox1P53783 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Sox1P53783 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Sox1P53783 Gm15487-201ENSMUST00000122373 465 ntBASIC16.12■□□□□ 0.17
Sox1P53783 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.12■□□□□ 0.17
Sox1P53783 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.12■□□□□ 0.17
Sox1P53783 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC16.12■□□□□ 0.17
Sox1P53783 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.12■□□□□ 0.17
Sox1P53783 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sox1P53783 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Gm8344-201ENSMUST00000119813 856 ntBASIC16.11■□□□□ 0.17
Sox1P53783 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Sox1P53783 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.11■□□□□ 0.17
Sox1P53783 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Sox1P53783 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Sox1P53783 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sox1P53783 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.1■□□□□ 0.17
Sox1P53783 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Sox1P53783 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Sox1P53783 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Gm14719-201ENSMUST00000121891 340 ntBASIC16.1■□□□□ 0.17
Sox1P53783 Gm12138-201ENSMUST00000122180 951 ntBASIC16.1■□□□□ 0.17
Sox1P53783 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC16.1■□□□□ 0.17
Sox1P53783 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.1■□□□□ 0.17
Sox1P53783 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Gm8602-201ENSMUST00000184045 607 ntBASIC16.1■□□□□ 0.17
Sox1P53783 Gm6745-201ENSMUST00000199216 526 ntBASIC16.1■□□□□ 0.17
Sox1P53783 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Sox1P53783 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sox1P53783 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Sox1P53783 AC124751.1-201ENSMUST00000222716 1408 ntBASIC16.1■□□□□ 0.17
Sox1P53783 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms