Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Gm16425-201ENSMUST00000118143 3130 ntBASIC18.94■□□□□ 0.62
Rfx1P48377 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.94■□□□□ 0.62
Rfx1P48377 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC18.94■□□□□ 0.62
Rfx1P48377 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Rfx1P48377 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Rfx1P48377 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.94■□□□□ 0.62
Rfx1P48377 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Gm10584-201ENSMUST00000207036 2628 ntBASIC18.94■□□□□ 0.62
Rfx1P48377 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Rfx1P48377 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Gm37736-201ENSMUST00000193564 2802 ntBASIC18.93■□□□□ 0.62
Rfx1P48377 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
Rfx1P48377 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
Rfx1P48377 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.93■□□□□ 0.62
Rfx1P48377 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.93■□□□□ 0.62
Rfx1P48377 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Rfx1P48377 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC18.93■□□□□ 0.62
Rfx1P48377 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx1P48377 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx1P48377 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx1P48377 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Rfx1P48377 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Rfx1P48377 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.92■□□□□ 0.62
Rfx1P48377 Gm8520-201ENSMUST00000186517 868 ntBASIC18.92■□□□□ 0.62
Rfx1P48377 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.92■□□□□ 0.62
Rfx1P48377 Gm5417-201ENSMUST00000079706 384 ntBASIC18.92■□□□□ 0.62
Rfx1P48377 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx1P48377 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx1P48377 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx1P48377 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx1P48377 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Rfx1P48377 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Rfx1P48377 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.91■□□□□ 0.62
Rfx1P48377 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Rfx1P48377 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx1P48377 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.91■□□□□ 0.62
Rfx1P48377 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC18.91■□□□□ 0.62
Rfx1P48377 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.9■□□□□ 0.62
Rfx1P48377 Gm2274-201ENSMUST00000184539 609 ntBASIC18.9■□□□□ 0.62
Rfx1P48377 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.9■□□□□ 0.62
Rfx1P48377 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC18.9■□□□□ 0.62
Rfx1P48377 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx1P48377 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms