Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Cdx2P43241 Gm44335-201ENSMUST00000196879 141 ntBASIC14.98□□□□□ -0.01
Cdx2P43241 Gm44297-201ENSMUST00000198304 141 ntBASIC14.98□□□□□ -0.01
Cdx2P43241 Gm44346-201ENSMUST00000198851 141 ntBASIC14.98□□□□□ -0.01
Cdx2P43241 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
Cdx2P43241 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC14.98□□□□□ -0.01
Cdx2P43241 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cdx2P43241 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Cdx2P43241 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Cdx2P43241 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC14.97□□□□□ -0.01
Cdx2P43241 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.97□□□□□ -0.01
Cdx2P43241 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 AA543401-201ENSMUST00000164248 1269 ntBASIC14.97□□□□□ -0.01
Cdx2P43241 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.97□□□□□ -0.01
Cdx2P43241 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Gm45612-201ENSMUST00000211320 160 ntBASIC14.97□□□□□ -0.01
Cdx2P43241 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
Cdx2P43241 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Cdx2P43241 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Cdx2P43241 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.97□□□□□ -0.01
Cdx2P43241 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Cdx2P43241 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Cdx2P43241 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cdx2P43241 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.97□□□□□ -0.01
Cdx2P43241 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Cdx2P43241 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
Cdx2P43241 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Gm5312-201ENSMUST00000203728 547 ntBASIC14.96□□□□□ -0.01
Cdx2P43241 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.96□□□□□ -0.01
Cdx2P43241 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Cdx2P43241 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.96□□□□□ -0.01
Cdx2P43241 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdx2P43241 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
Cdx2P43241 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Cdx2P43241 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.95□□□□□ -0.02
Cdx2P43241 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.95□□□□□ -0.02
Cdx2P43241 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Cdx2P43241 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC14.95□□□□□ -0.02
Cdx2P43241 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.95□□□□□ -0.02
Cdx2P43241 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.95□□□□□ -0.02
Cdx2P43241 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.95□□□□□ -0.02
Cdx2P43241 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Cdx2P43241 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
Cdx2P43241 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdx2P43241 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdx2P43241 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms