Protein–RNA interactions for Protein: P15379

Cd44, CD44 antigen, mousemouse

Predictions only

Length 778 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd44P15379 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Cd44P15379 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.62■□□□□ 0.25
Cd44P15379 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Cd44P15379 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Mir6404-201ENSMUST00000183699 94 ntBASIC16.62■□□□□ 0.25
Cd44P15379 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Cd44P15379 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cd44P15379 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Cd44P15379 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cd44P15379 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cd44P15379 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Cd44P15379 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC16.61■□□□□ 0.25
Cd44P15379 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Gm18032-201ENSMUST00000222541 538 ntBASIC16.61■□□□□ 0.25
Cd44P15379 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.61■□□□□ 0.25
Cd44P15379 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.61■□□□□ 0.25
Cd44P15379 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Cd44P15379 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC16.61■□□□□ 0.25
Cd44P15379 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cd44P15379 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Cd44P15379 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Cd44P15379 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.6■□□□□ 0.25
Cd44P15379 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Cd44P15379 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC16.6■□□□□ 0.25
Cd44P15379 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Cd44P15379 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Cd44P15379 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Cd44P15379 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cd44P15379 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Cd44P15379 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Cd44P15379 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Cd44P15379 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cd44P15379 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Cd44P15379 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cd44P15379 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cd44P15379 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Cd44P15379 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Cd44P15379 Gm6433-201ENSMUST00000118634 875 ntBASIC16.58■□□□□ 0.24
Cd44P15379 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Cd44P15379 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cd44P15379 Gm18101-201ENSMUST00000215769 548 ntBASIC16.58■□□□□ 0.24
Cd44P15379 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.58■□□□□ 0.24
Cd44P15379 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Cd44P15379 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Cd44P15379 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cd44P15379 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cd44P15379 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms