Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Chmp6P0C0A3 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Gm13312-201ENSMUST00000119631 718 ntBASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Chmp6P0C0A3 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rprl3-201ENSMUST00000157400 290 ntBASIC17.21■□□□□ 0.35
Chmp6P0C0A3 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Chmp6P0C0A3 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Chmp6P0C0A3 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Chmp6P0C0A3 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Chmp6P0C0A3 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Chmp6P0C0A3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Chmp6P0C0A3 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms