Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC12.29□□□□□ -0.44
Hoxd3P09027 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC12.29□□□□□ -0.44
Hoxd3P09027 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Hoxd3P09027 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC12.29□□□□□ -0.44
Hoxd3P09027 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Hoxd3P09027 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Hoxd3P09027 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hoxd3P09027 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm13418-201ENSMUST00000119097 944 ntBASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm2651-201ENSMUST00000203560 838 ntBASIC12.28□□□□□ -0.44
Hoxd3P09027 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm10060-201ENSMUST00000212002 111 ntBASIC12.28□□□□□ -0.44
Hoxd3P09027 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC12.28□□□□□ -0.44
Hoxd3P09027 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gm5837-201ENSMUST00000191844 1369 ntBASIC12.28□□□□□ -0.44
Hoxd3P09027 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Hoxd3P09027 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hoxd3P09027 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Hoxd3P09027 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hoxd3P09027 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC12.27□□□□□ -0.45
Hoxd3P09027 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Dancr-204ENSMUST00000132389 2347 ntBASIC12.27□□□□□ -0.45
Hoxd3P09027 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Hoxd3P09027 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC12.27□□□□□ -0.45
Hoxd3P09027 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms