Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vti1aO89116 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vti1aO89116 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Vti1aO89116 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Vti1aO89116 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Vti1aO89116 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.03■□□□□ 0.32
Vti1aO89116 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vti1aO89116 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vti1aO89116 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Vti1aO89116 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Vti1aO89116 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Gm8097-201ENSMUST00000117903 829 ntBASIC17.02■□□□□ 0.32
Vti1aO89116 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.02■□□□□ 0.32
Vti1aO89116 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.32
Vti1aO89116 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.02■□□□□ 0.32
Vti1aO89116 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Vti1aO89116 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vti1aO89116 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Vti1aO89116 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.01■□□□□ 0.31
Vti1aO89116 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Vti1aO89116 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Vti1aO89116 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vti1aO89116 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vti1aO89116 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vti1aO89116 Gm12497-201ENSMUST00000138778 237 ntBASIC17.01■□□□□ 0.31
Vti1aO89116 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.01■□□□□ 0.31
Vti1aO89116 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.01■□□□□ 0.31
Vti1aO89116 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.01■□□□□ 0.31
Vti1aO89116 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.01■□□□□ 0.31
Vti1aO89116 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.01■□□□□ 0.31
Vti1aO89116 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.01■□□□□ 0.31
Vti1aO89116 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.01■□□□□ 0.31
Vti1aO89116 Psmb5-202ENSMUST00000227257 622 ntBASIC17.01■□□□□ 0.31
Vti1aO89116 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.01■□□□□ 0.31
Vti1aO89116 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vti1aO89116 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.01■□□□□ 0.31
Vti1aO89116 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Vti1aO89116 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
Vti1aO89116 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Ptprs-211ENSMUST00000223859 5588 ntBASIC17■□□□□ 0.31
Vti1aO89116 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Vti1aO89116 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17■□□□□ 0.31
Vti1aO89116 Gm11779-201ENSMUST00000118541 368 ntBASIC17■□□□□ 0.31
Vti1aO89116 Gm15467-201ENSMUST00000120582 445 ntBASIC17■□□□□ 0.31
Vti1aO89116 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17■□□□□ 0.31
Vti1aO89116 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17■□□□□ 0.31
Vti1aO89116 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17■□□□□ 0.31
Vti1aO89116 Gm37500-201ENSMUST00000192059 1443 ntBASIC17■□□□□ 0.31
Vti1aO89116 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
Vti1aO89116 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Vti1aO89116 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Vti1aO89116 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17■□□□□ 0.31
Vti1aO89116 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17■□□□□ 0.31
Vti1aO89116 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Vti1aO89116 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
Vti1aO89116 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vti1aO89116 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.99■□□□□ 0.31
Vti1aO89116 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vti1aO89116 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms