Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Hmgb3O54879 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC13.16□□□□□ -0.3
Hmgb3O54879 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC13.16□□□□□ -0.3
Hmgb3O54879 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Hmgb3O54879 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
Hmgb3O54879 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Hmgb3O54879 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC13.15□□□□□ -0.3
Hmgb3O54879 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC13.15□□□□□ -0.3
Hmgb3O54879 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb3O54879 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
Hmgb3O54879 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
Hmgb3O54879 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC13.14□□□□□ -0.31
Hmgb3O54879 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Hmgb3O54879 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb3O54879 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC13.14□□□□□ -0.31
Hmgb3O54879 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.13□□□□□ -0.31
Hmgb3O54879 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Gm18958-201ENSMUST00000174258 762 ntBASIC13.13□□□□□ -0.31
Hmgb3O54879 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC13.13□□□□□ -0.31
Hmgb3O54879 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC13.13□□□□□ -0.31
Hmgb3O54879 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.13□□□□□ -0.31
Hmgb3O54879 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Asic1-205ENSMUST00000228185 1818 ntBASIC13.13□□□□□ -0.31
Hmgb3O54879 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.13□□□□□ -0.31
Hmgb3O54879 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb3O54879 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms