Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim54Q9ERP3 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim54Q9ERP3 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Gm4995-201ENSMUST00000117247 432 ntBASIC17.11■□□□□ 0.33
Trim54Q9ERP3 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Gm5682-201ENSMUST00000173402 505 ntBASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Gm27702-201ENSMUST00000184512 56 ntBASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim54Q9ERP3 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim54Q9ERP3 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms