Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Fam105a-203ENSMUST00000226170 3043 ntBASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Gm13823-201ENSMUST00000119930 345 ntBASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Rpph1-201ENSMUST00000175096 319 ntBASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Gm18246-201ENSMUST00000221023 728 ntBASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.21■□□□□ 0.19
Nkx2-4Q9EQM3 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Nkx2-4Q9EQM3 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.21■□□□□ 0.18
Nkx2-4Q9EQM3 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Nkx2-4Q9EQM3 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Nkx2-4Q9EQM3 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Gm12151-201ENSMUST00000121374 290 ntBASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Nkx2-4Q9EQM3 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm22065-201ENSMUST00000103753 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm22066-201ENSMUST00000103761 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24932-201ENSMUST00000103763 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24115-201ENSMUST00000103799 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm22190-201ENSMUST00000103827 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm22191-201ENSMUST00000103831 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24721-201ENSMUST00000103849 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm28018-201ENSMUST00000103869 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm26399-201ENSMUST00000103937 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm9385-201ENSMUST00000117563 472 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm25349-201ENSMUST00000177728 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm23616-201ENSMUST00000177797 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm25871-201ENSMUST00000177816 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24752-201ENSMUST00000178240 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24496-201ENSMUST00000178287 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm25649-201ENSMUST00000178476 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm25548-201ENSMUST00000178681 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm23147-201ENSMUST00000178841 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm26095-201ENSMUST00000179270 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm22171-201ENSMUST00000179283 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm23936-201ENSMUST00000179354 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm22619-201ENSMUST00000179516 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm25255-201ENSMUST00000179579 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24755-201ENSMUST00000179691 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm26506-201ENSMUST00000179692 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm25086-201ENSMUST00000179931 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm23243-201ENSMUST00000180047 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24659-201ENSMUST00000180212 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm24169-201ENSMUST00000180244 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm23689-201ENSMUST00000180354 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm27359-201ENSMUST00000184153 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm27785-201ENSMUST00000184268 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm27466-201ENSMUST00000184396 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Gm27703-201ENSMUST00000184836 110 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.19■□□□□ 0.18
Nkx2-4Q9EQM3 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms