Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cchcr1Q8K2I2 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Asic1-205ENSMUST00000228185 1818 ntBASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC18.77■□□□□ 0.59
Cchcr1Q8K2I2 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Gm6257-201ENSMUST00000163864 910 ntBASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cchcr1Q8K2I2 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Gm45328-201ENSMUST00000210942 917 ntBASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.75■□□□□ 0.59
Cchcr1Q8K2I2 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Gm11950-201ENSMUST00000121615 838 ntBASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Gm25016-201ENSMUST00000158399 131 ntBASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cchcr1Q8K2I2 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.73■□□□□ 0.59
Cchcr1Q8K2I2 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms