Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Gm4913-201ENSMUST00000117075 1290 ntBASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Gm7787-201ENSMUST00000216858 688 ntBASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Gm5648-201ENSMUST00000122244 1587 ntBASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Gm19439-201ENSMUST00000198195 2273 ntBASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Gm17968-201ENSMUST00000194902 784 ntBASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Usp40Q8BWR4 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Gm28265-201ENSMUST00000188201 2319 ntBASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Usp40Q8BWR4 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC21.66■■□□□ 1.06
Usp40Q8BWR4 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Usp40Q8BWR4 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 AC151286.1-201ENSMUST00000198489 145 ntBASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Gm15500-202ENSMUST00000071641 1019 ntBASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Usp40Q8BWR4 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Usp40Q8BWR4 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC21.64■■□□□ 1.06
Usp40Q8BWR4 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Usp40Q8BWR4 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Usp40Q8BWR4 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Usp40Q8BWR4 Gm44729-201ENSMUST00000206759 2052 ntBASIC21.64■■□□□ 1.05
Usp40Q8BWR4 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms