Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scaf4Q6PFF0 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.67■□□□□ 0.1
Scaf4Q6PFF0 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Gm2274-201ENSMUST00000184539 609 ntBASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scaf4Q6PFF0 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scaf4Q6PFF0 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scaf4Q6PFF0 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms