Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Trim28Q62318 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim28Q62318 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC20.53■□□□□ 0.88
Trim28Q62318 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 AC160980.1-201ENSMUST00000224136 970 ntBASIC20.53■□□□□ 0.88
Trim28Q62318 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trim28Q62318 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC20.53■□□□□ 0.88
Trim28Q62318 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
Trim28Q62318 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim28Q62318 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim28Q62318 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Trim28Q62318 H2af-ps-201ENSMUST00000119066 295 ntBASIC20.52■□□□□ 0.88
Trim28Q62318 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Trim28Q62318 Gm8318-201ENSMUST00000182954 872 ntBASIC20.52■□□□□ 0.88
Trim28Q62318 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 AC174742.1-201ENSMUST00000218272 304 ntBASIC20.52■□□□□ 0.88
Trim28Q62318 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim28Q62318 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim28Q62318 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim28Q62318 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
Trim28Q62318 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Gm19430-201ENSMUST00000193847 2137 ntBASIC20.51■□□□□ 0.87
Trim28Q62318 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
Trim28Q62318 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trim28Q62318 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Gm42473-201ENSMUST00000201056 2291 ntBASIC20.51■□□□□ 0.87
Trim28Q62318 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC20.51■□□□□ 0.87
Trim28Q62318 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC20.51■□□□□ 0.87
Trim28Q62318 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC20.51■□□□□ 0.87
Trim28Q62318 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC20.51■□□□□ 0.87
Trim28Q62318 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC20.51■□□□□ 0.87
Trim28Q62318 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim28Q62318 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC20.5■□□□□ 0.87
Trim28Q62318 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Trim28Q62318 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC20.5■□□□□ 0.87
Trim28Q62318 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Trim28Q62318 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC20.5■□□□□ 0.87
Trim28Q62318 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Bloc1s5-203ENSMUST00000224902 612 ntBASIC20.5■□□□□ 0.87
Trim28Q62318 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Gm5184-201ENSMUST00000220417 1702 ntBASIC20.5■□□□□ 0.87
Trim28Q62318 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim28Q62318 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Gm27702-201ENSMUST00000184512 56 ntBASIC20.49■□□□□ 0.87
Trim28Q62318 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim28Q62318 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim28Q62318 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms