Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Upf3bQ3ULL6 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.96■□□□□ 0.31
Upf3bQ3ULL6 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Upf3bQ3ULL6 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Upf3bQ3ULL6 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Upf3bQ3ULL6 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Upf3bQ3ULL6 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Upf3bQ3ULL6 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Gm12644-201ENSMUST00000119935 606 ntBASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Upf3bQ3ULL6 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Gm9172-201ENSMUST00000212092 954 ntBASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Upf3bQ3ULL6 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.93■□□□□ 0.3
Upf3bQ3ULL6 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms