Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm17968-201ENSMUST00000194902 784 ntBASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Auts2-212ENSMUST00000178555 309 ntBASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Gm44492-201ENSMUST00000197012 141 ntBASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3aQ3ULJ3 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3aQ3ULJ3 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Gm15920-201ENSMUST00000118998 402 ntBASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Gm11025-201ENSMUST00000140773 466 ntBASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Upf3aQ3ULJ3 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.6■□□□□ 0.25
Upf3aQ3ULJ3 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms