Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Nkx3-1P97436 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Gm37166-201ENSMUST00000195473 2474 ntBASIC13.68□□□□□ -0.22
Nkx3-1P97436 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC13.68□□□□□ -0.22
Nkx3-1P97436 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nkx3-1P97436 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm23935-201ENSMUST00000102303 57 ntBASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm24270-201ENSMUST00000102326 57 ntBASIC13.67□□□□□ -0.22
Nkx3-1P97436 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm14822-201ENSMUST00000122247 291 ntBASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm24245-201ENSMUST00000157318 57 ntBASIC13.67□□□□□ -0.22
Nkx3-1P97436 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 AC117588.1-201ENSMUST00000228510 999 ntBASIC13.67□□□□□ -0.22
Nkx3-1P97436 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Nkx3-1P97436 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Nkx3-1P97436 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gm8784-201ENSMUST00000222096 1435 ntBASIC13.65□□□□□ -0.22
Nkx3-1P97436 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gm11764-201ENSMUST00000120221 623 ntBASIC13.65□□□□□ -0.22
Nkx3-1P97436 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Nkx3-1P97436 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms