Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Hmgb1P63158 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Hmgb1P63158 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.38
Hmgb1P63158 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.45■□□□□ 0.38
Hmgb1P63158 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
Hmgb1P63158 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Hmgb1P63158 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.45■□□□□ 0.38
Hmgb1P63158 Gm6623-201ENSMUST00000173570 544 ntBASIC17.45■□□□□ 0.38
Hmgb1P63158 Gm5587-201ENSMUST00000206270 674 ntBASIC17.45■□□□□ 0.38
Hmgb1P63158 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb1P63158 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.44■□□□□ 0.38
Hmgb1P63158 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Hmgb1P63158 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb1P63158 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Hmgb1P63158 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Hmgb1P63158 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.43■□□□□ 0.38
Hmgb1P63158 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.43■□□□□ 0.38
Hmgb1P63158 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb1P63158 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.42■□□□□ 0.38
Hmgb1P63158 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.42■□□□□ 0.38
Hmgb1P63158 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Gm10231-201ENSMUST00000181584 441 ntBASIC17.42■□□□□ 0.38
Hmgb1P63158 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Gm10175-202ENSMUST00000208752 441 ntBASIC17.42■□□□□ 0.38
Hmgb1P63158 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
Hmgb1P63158 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Hmgb1P63158 Asic1-205ENSMUST00000228185 1818 ntBASIC17.42■□□□□ 0.38
Hmgb1P63158 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb1P63158 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms