Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Gm6257-201ENSMUST00000163864 910 ntBASIC16.75■□□□□ 0.27
Shmt1P50431 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.75■□□□□ 0.27
Shmt1P50431 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.75■□□□□ 0.27
Shmt1P50431 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC16.75■□□□□ 0.27
Shmt1P50431 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Shmt1P50431 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Shmt1P50431 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Shmt1P50431 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.74■□□□□ 0.27
Shmt1P50431 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.74■□□□□ 0.27
Shmt1P50431 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.74■□□□□ 0.27
Shmt1P50431 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Shmt1P50431 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shmt1P50431 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.73■□□□□ 0.27
Shmt1P50431 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.73■□□□□ 0.27
Shmt1P50431 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.73■□□□□ 0.27
Shmt1P50431 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Shmt1P50431 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.73■□□□□ 0.27
Shmt1P50431 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.73■□□□□ 0.27
Shmt1P50431 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Shmt1P50431 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shmt1P50431 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Shmt1P50431 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.72■□□□□ 0.27
Shmt1P50431 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.72■□□□□ 0.27
Shmt1P50431 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.72■□□□□ 0.27
Shmt1P50431 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Shmt1P50431 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Shmt1P50431 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.72■□□□□ 0.27
Shmt1P50431 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Shmt1P50431 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Shmt1P50431 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Shmt1P50431 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.71■□□□□ 0.27
Shmt1P50431 Gm6089-201ENSMUST00000197666 938 ntBASIC16.71■□□□□ 0.27
Shmt1P50431 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Shmt1P50431 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.71■□□□□ 0.27
Shmt1P50431 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Gm10060-201ENSMUST00000212002 111 ntBASIC16.71■□□□□ 0.27
Shmt1P50431 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.71■□□□□ 0.27
Shmt1P50431 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.71■□□□□ 0.27
Shmt1P50431 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.71■□□□□ 0.27
Shmt1P50431 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shmt1P50431 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms