Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Haglr-201ENSMUST00000100000 2085 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col18a1P39061 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC20.95■□□□□ 0.94
Col18a1P39061 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Gm16026-204ENSMUST00000162652 683 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 Gm27920-201ENSMUST00000183953 96 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 Gm18766-201ENSMUST00000189811 808 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Gm6007-201ENSMUST00000208170 823 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC20.95■□□□□ 0.94
Col18a1P39061 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC20.94■□□□□ 0.94
Col18a1P39061 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC20.94■□□□□ 0.94
Col18a1P39061 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC20.94■□□□□ 0.94
Col18a1P39061 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Col18a1P39061 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.94■□□□□ 0.94
Col18a1P39061 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.94■□□□□ 0.94
Col18a1P39061 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col18a1P39061 Gm29667-201ENSMUST00000190817 490 ntBASIC20.93■□□□□ 0.94
Col18a1P39061 Gm8515-201ENSMUST00000194852 576 ntBASIC20.93■□□□□ 0.94
Col18a1P39061 Gm6180-201ENSMUST00000065243 498 ntBASIC20.93■□□□□ 0.94
Col18a1P39061 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col18a1P39061 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col18a1P39061 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Col18a1P39061 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.93■□□□□ 0.94
Col18a1P39061 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Col18a1P39061 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC20.93■□□□□ 0.94
Col18a1P39061 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col18a1P39061 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col18a1P39061 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col18a1P39061 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC20.93■□□□□ 0.94
Col18a1P39061 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col18a1P39061 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Col18a1P39061 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC20.93■□□□□ 0.94
Col18a1P39061 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC20.92■□□□□ 0.94
Col18a1P39061 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC20.92■□□□□ 0.94
Col18a1P39061 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Col18a1P39061 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC20.92■□□□□ 0.94
Col18a1P39061 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.92■□□□□ 0.94
Col18a1P39061 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col18a1P39061 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Prkcz2-201ENSMUST00000206136 1756 ntBASIC20.92■□□□□ 0.94
Col18a1P39061 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Col18a1P39061 AC160980.1-201ENSMUST00000224136 970 ntBASIC20.92■□□□□ 0.94
Col18a1P39061 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col18a1P39061 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col18a1P39061 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC20.91■□□□□ 0.94
Col18a1P39061 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC20.91■□□□□ 0.94
Col18a1P39061 Gm15483-201ENSMUST00000120338 456 ntBASIC20.91■□□□□ 0.94
Col18a1P39061 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col18a1P39061 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC20.91■□□□□ 0.94
Col18a1P39061 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Gm6263-201ENSMUST00000120029 1342 ntBASIC20.91■□□□□ 0.94
Col18a1P39061 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Col18a1P39061 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col18a1P39061 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Gm14722-201ENSMUST00000118943 689 ntBASIC20.9■□□□□ 0.94
Col18a1P39061 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Col18a1P39061 Gm45384-201ENSMUST00000210451 277 ntBASIC20.9■□□□□ 0.94
Col18a1P39061 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Col18a1P39061 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Col18a1P39061 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.9■□□□□ 0.94
Col18a1P39061 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC20.9■□□□□ 0.94
Col18a1P39061 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Col18a1P39061 Gm28631-201ENSMUST00000190740 334 ntBASIC20.9■□□□□ 0.94
Col18a1P39061 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col18a1P39061 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col18a1P39061 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col18a1P39061 Asic1-205ENSMUST00000228185 1818 ntBASIC20.89■□□□□ 0.93
Col18a1P39061 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col18a1P39061 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms