Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC17.16■□□□□ 0.34
RaraP11416 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RaraP11416 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RaraP11416 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.16■□□□□ 0.34
RaraP11416 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RaraP11416 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
RaraP11416 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.16■□□□□ 0.34
RaraP11416 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.16■□□□□ 0.34
RaraP11416 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Gm9987-201ENSMUST00000069768 567 ntBASIC17.16■□□□□ 0.34
RaraP11416 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RaraP11416 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RaraP11416 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RaraP11416 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.15■□□□□ 0.34
RaraP11416 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Mir6404-201ENSMUST00000183699 94 ntBASIC17.15■□□□□ 0.34
RaraP11416 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.15■□□□□ 0.34
RaraP11416 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RaraP11416 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
RaraP11416 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.14■□□□□ 0.33
RaraP11416 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RaraP11416 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RaraP11416 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.14■□□□□ 0.33
RaraP11416 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.14■□□□□ 0.33
RaraP11416 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RaraP11416 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.13■□□□□ 0.33
RaraP11416 Gm10013-201ENSMUST00000106074 672 ntBASIC17.13■□□□□ 0.33
RaraP11416 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
RaraP11416 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
RaraP11416 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RaraP11416 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.13■□□□□ 0.33
RaraP11416 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RaraP11416 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RaraP11416 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.12■□□□□ 0.33
RaraP11416 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms