Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col3a1P08121 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col3a1P08121 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col3a1P08121 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.81■□□□□ 0.6
Col3a1P08121 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col3a1P08121 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col3a1P08121 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col3a1P08121 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.8■□□□□ 0.6
Col3a1P08121 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC18.8■□□□□ 0.6
Col3a1P08121 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Gm44492-201ENSMUST00000197012 141 ntBASIC18.8■□□□□ 0.6
Col3a1P08121 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC18.8■□□□□ 0.6
Col3a1P08121 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col3a1P08121 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Col3a1P08121 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.8■□□□□ 0.6
Col3a1P08121 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC18.79■□□□□ 0.6
Col3a1P08121 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Gm15427-201ENSMUST00000117288 531 ntBASIC18.79■□□□□ 0.6
Col3a1P08121 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC18.79■□□□□ 0.6
Col3a1P08121 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.79■□□□□ 0.6
Col3a1P08121 Gm18246-201ENSMUST00000221023 728 ntBASIC18.79■□□□□ 0.6
Col3a1P08121 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC18.79■□□□□ 0.6
Col3a1P08121 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col3a1P08121 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Col3a1P08121 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC18.78■□□□□ 0.6
Col3a1P08121 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC18.78■□□□□ 0.6
Col3a1P08121 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.78■□□□□ 0.6
Col3a1P08121 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Col3a1P08121 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Gm5184-201ENSMUST00000220417 1702 ntBASIC18.78■□□□□ 0.6
Col3a1P08121 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col3a1P08121 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Col3a1P08121 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.77■□□□□ 0.6
Col3a1P08121 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.77■□□□□ 0.6
Col3a1P08121 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC18.77■□□□□ 0.6
Col3a1P08121 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col3a1P08121 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Col3a1P08121 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
Col3a1P08121 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms