Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Gm10461-201ENSMUST00000202073 4786 ntBASIC15.49■□□□□ 0.07
Chd3B1AR17 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.49■□□□□ 0.07
Chd3B1AR17 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Chd3B1AR17 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC15.48■□□□□ 0.07
Chd3B1AR17 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 AC093926.2-201ENSMUST00000214468 1228 ntBASIC15.48■□□□□ 0.07
Chd3B1AR17 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC15.48■□□□□ 0.07
Chd3B1AR17 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Chd3B1AR17 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Gm38327-201ENSMUST00000195852 1755 ntBASIC15.47■□□□□ 0.07
Chd3B1AR17 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC15.47■□□□□ 0.07
Chd3B1AR17 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC15.47■□□□□ 0.07
Chd3B1AR17 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC15.47■□□□□ 0.07
Chd3B1AR17 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Chd3B1AR17 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms