Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Trim3Q9R1R2 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.96□□□□□ -0.01
Trim3Q9R1R2 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Gm15794-201ENSMUST00000120182 631 ntBASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC14.96□□□□□ -0.01
Trim3Q9R1R2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim3Q9R1R2 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim3Q9R1R2 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim3Q9R1R2 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim3Q9R1R2 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Trim3Q9R1R2 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trim3Q9R1R2 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Gm9103-201ENSMUST00000119371 405 ntBASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Olfr129-201ENSMUST00000122318 993 ntBASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim3Q9R1R2 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms