Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim54Q9ERP3 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Gm27646-201ENSMUST00000183989 110 ntBASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trim54Q9ERP3 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim54Q9ERP3 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Gm14494-201ENSMUST00000118786 435 ntBASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Gm25925-201ENSMUST00000158314 306 ntBASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim54Q9ERP3 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
Trim54Q9ERP3 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Gm9727-201ENSMUST00000161387 555 ntBASIC17.14■□□□□ 0.33
Trim54Q9ERP3 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim54Q9ERP3 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms