Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Sybu-209ENSMUST00000228639 4113 ntBASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.72■□□□□ 0.11
Lima1Q9ERG0 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Gm7889-201ENSMUST00000185591 958 ntBASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Actl10-202ENSMUST00000226583 1501 ntBASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Slc35b2-202ENSMUST00000223987 1766 ntBASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Lima1Q9ERG0 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Lima1Q9ERG0 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Lima1Q9ERG0 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Lima1Q9ERG0 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Gm10584-201ENSMUST00000207036 2628 ntBASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Gm7213-201ENSMUST00000215977 950 ntBASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lima1Q9ERG0 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC15.69■□□□□ 0.1
Lima1Q9ERG0 Mir5130-201ENSMUST00000175160 84 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms