Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gm23935-201ENSMUST00000102303 57 ntBASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gm24270-201ENSMUST00000102326 57 ntBASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gm24245-201ENSMUST00000157318 57 ntBASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gm8318-201ENSMUST00000182954 872 ntBASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gm2756-201ENSMUST00000195851 400 ntBASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 AC131709.1-201ENSMUST00000224731 1180 ntBASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cpsf1Q9EPU4 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Gm5366-201ENSMUST00000215494 1338 ntBASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 AC069562.2-201ENSMUST00000224644 2146 ntBASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cpsf1Q9EPU4 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Mir8117-201ENSMUST00000184773 107 ntBASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.79■■□□□ 1.08
Cpsf1Q9EPU4 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 AC090659.1-201ENSMUST00000224334 768 ntBASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 AC159295.1-201ENSMUST00000225326 940 ntBASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Cpsf1Q9EPU4 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Gm13294-201ENSMUST00000121757 1330 ntBASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Gm43575-201ENSMUST00000196420 516 ntBASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC21.77■■□□□ 1.08
Cpsf1Q9EPU4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms