Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ddx56Q9D0R4 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Ddx56Q9D0R4 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.7■□□□□ 0.26
Ddx56Q9D0R4 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Gm14859-201ENSMUST00000117752 357 ntBASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Gm6257-201ENSMUST00000163864 910 ntBASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx56Q9D0R4 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Gm25406-201ENSMUST00000157599 105 ntBASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Gm44454-201ENSMUST00000198541 138 ntBASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.68■□□□□ 0.26
Ddx56Q9D0R4 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx56Q9D0R4 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms