Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Brf1Q8CFK2 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Cmtm5-203ENSMUST00000227441 610 ntBASIC19.18■□□□□ 0.66
Brf1Q8CFK2 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC19.18■□□□□ 0.66
Brf1Q8CFK2 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC19.17■□□□□ 0.66
Brf1Q8CFK2 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Gm7506-201ENSMUST00000207758 815 ntBASIC19.16■□□□□ 0.66
Brf1Q8CFK2 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Brf1Q8CFK2 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Gm6257-201ENSMUST00000163864 910 ntBASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC19.15■□□□□ 0.66
Brf1Q8CFK2 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.66
Brf1Q8CFK2 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Gm12644-201ENSMUST00000119935 606 ntBASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Brf1Q8CFK2 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms